Neurotools

Welcome to Adrian Imfeld's neurotools site!

• Download neurotools-bundle for SPM5 / SPM8 (includes spmbatch, dicom2nifti, and log_roi_batch)
• Tools work on Matlab 7.0 or later (no additional toolboxes required), are platform-independent, and require SPM5 or SPM8(b).
• Please note that my e-mail support has been discontinued.

Documentation is included in the headers of the Matlab files.

spmbatch v3.3

spmbatch (former spm5batch) creates and runs SPM-jobs for multiple subjects by replacing paths in a given template-job. Jobs on the first level (single subject) are supported, e.g. preprocessing of fMRI data, first-level statistics, image calculator, check registration, jobs with external SPM toolboxes.

dicom2nifti v3.1

dicom2nifti converts DICOM-files (.dcm) to NIfTI-files (.nii or .img/.hdr). A specified directory and its subdirectories are searched for DICOM-files. These files will then be converted to NIfTI format using SPM functions. The NIfTI-files will be properly named, moved to a target-directory and sorted in subdirectories according to their type (anatomical, functional, or DTI).

log_roi_batch v2.0

log_roi_batch creates tables of mean or standard deviation for regions of interest (ROIs) or counts voxels with values within a given range. Voxel exclusion criteria can be specified, which can also be used to count the number of included or excluded voxels within a given value range.

Adrian Imfeld

	cloud solutions - we take your research to the net!
	If you're interested, also have a look at my recent artificial life project: cellmorphs

Or check out this awesome skeptics' podcast: